STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ20696.1Ribosomal large subunit pseudouridine synthase F. (246 aa)    
Predicted Functional Partners:
SDY73052.1
Cytidylate kinase.
 
  
 0.828
SDY87636.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
  0.798
SDY43688.1
Exodeoxyribonuclease-3.
  
    0.733
SDY70236.1
GTP-binding protein.
 
  
 0.694
SDZ20679.1
Hypothetical protein.
       0.613
SDY75548.1
2-oxoisovalerate dehydrogenase E1 component.
    
  0.588
SDY70154.1
Segregation and condensation protein B.
  
  
 0.547
SDZ20714.1
Hypothetical protein.
       0.512
SDZ20730.1
Hypothetical protein.
       0.512
SDZ20664.1
Hypothetical protein.
       0.451
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.