STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ17297.1Outer membrane protein assembly factor BamA. (763 aa)    
Predicted Functional Partners:
SDZ17322.1
Autotransporter translocation and assembly factor TamB.
 
   
 0.955
SDY45988.1
Hypothetical protein.
  
 0.920
SDZ50546.1
Tetratricopeptide repeat-containing protein.
  
 0.896
SDZ56355.1
Beta-barrel assembly machine subunit BamD.
   
 0.873
SDZ38587.1
Curved DNA-binding protein.
  
 
  0.698
SDZ22630.1
Leucine-rich repeat (LRR) protein.
    
  0.683
SDY99089.1
ATP-dependent Lon protease.
  
 
 0.673
SDZ29527.1
Hypothetical protein.
  
     0.668
SDZ52287.1
ATPase family associated with various cellular activities (AAA).
    
  0.663
SDY97670.1
Hypothetical protein.
  
     0.648
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.