SDZ18236.1 protein (Rhodonellum ikkaensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDZ18236.1

Signal recognition particle subunit FFH/SRP54 (srp54). (445 aa)

Predicted Functional Partners:

SDZ12064.1

0.999

SDY74540.1

0.991

SDY74515.1

0.990

SDY74569.1

0.990

SDY74596.1

0.990

SDY74704.1

0.990

SDY74784.1

0.990

SDY74812.1

0.990

SDY74924.1

0.990

SDY75038.1

0.990

Your Current Organism:

Rhodonellum ikkaensis

NCBI taxonomy Id: 336829
Other names: R. ikkaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY74515.1	SDY74540.1	SAMN05444412_102445	SAMN05444412_102446	LSU ribosomal protein L3P.	LSU ribosomal protein L4P.	0.999
SDY74515.1	SDY74569.1	SAMN05444412_102445	SAMN05444412_102447	LSU ribosomal protein L3P.	Large subunit ribosomal protein L23.	0.999
SDY74515.1	SDY74596.1	SAMN05444412_102445	SAMN05444412_102448	LSU ribosomal protein L3P.	LSU ribosomal protein L2P.	0.999
SDY74515.1	SDY74704.1	SAMN05444412_102445	SAMN05444412_102452	LSU ribosomal protein L3P.	LSU ribosomal protein L16P.	0.999
SDY74515.1	SDY74784.1	SAMN05444412_102445	SAMN05444412_102455	LSU ribosomal protein L3P.	LSU ribosomal protein L14P.	0.999
SDY74515.1	SDY74812.1	SAMN05444412_102445	SAMN05444412_102456	LSU ribosomal protein L3P.	LSU ribosomal protein L24P.	0.999
SDY74515.1	SDY74924.1	SAMN05444412_102445	SAMN05444412_102460	LSU ribosomal protein L3P.	LSU ribosomal protein L6P.	0.999
SDY74515.1	SDY75038.1	SAMN05444412_102445	SAMN05444412_102464	LSU ribosomal protein L3P.	LSU ribosomal protein L15P.	0.999
SDY74515.1	SDZ12064.1	SAMN05444412_102445	SAMN05444412_10659	LSU ribosomal protein L3P.	Fused signal recognition particle receptor.	0.974
SDY74515.1	SDZ18236.1	SAMN05444412_102445	SAMN05444412_10770	LSU ribosomal protein L3P.	Signal recognition particle subunit FFH/SRP54 (srp54).	0.990
SDY74540.1	SDY74515.1	SAMN05444412_102446	SAMN05444412_102445	LSU ribosomal protein L4P.	LSU ribosomal protein L3P.	0.999
SDY74540.1	SDY74569.1	SAMN05444412_102446	SAMN05444412_102447	LSU ribosomal protein L4P.	Large subunit ribosomal protein L23.	0.999
SDY74540.1	SDY74596.1	SAMN05444412_102446	SAMN05444412_102448	LSU ribosomal protein L4P.	LSU ribosomal protein L2P.	0.999
SDY74540.1	SDY74704.1	SAMN05444412_102446	SAMN05444412_102452	LSU ribosomal protein L4P.	LSU ribosomal protein L16P.	0.999
SDY74540.1	SDY74784.1	SAMN05444412_102446	SAMN05444412_102455	LSU ribosomal protein L4P.	LSU ribosomal protein L14P.	0.999
SDY74540.1	SDY74812.1	SAMN05444412_102446	SAMN05444412_102456	LSU ribosomal protein L4P.	LSU ribosomal protein L24P.	0.999
SDY74540.1	SDY74924.1	SAMN05444412_102446	SAMN05444412_102460	LSU ribosomal protein L4P.	LSU ribosomal protein L6P.	0.999
SDY74540.1	SDY75038.1	SAMN05444412_102446	SAMN05444412_102464	LSU ribosomal protein L4P.	LSU ribosomal protein L15P.	0.999
SDY74540.1	SDZ12064.1	SAMN05444412_102446	SAMN05444412_10659	LSU ribosomal protein L4P.	Fused signal recognition particle receptor.	0.969
SDY74540.1	SDZ18236.1	SAMN05444412_102446	SAMN05444412_10770	LSU ribosomal protein L4P.	Signal recognition particle subunit FFH/SRP54 (srp54).	0.991