STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ22668.1Iron complex outermembrane recepter protein. (818 aa)    
Predicted Functional Partners:
SDZ22650.1
Protein of unknown function.
       0.792
SDZ00993.1
Outer membrane transport energization protein TonB.
   
  0.616
SDZ48798.1
TonB family C-terminal domain-containing protein.
   
  0.616
SDZ50511.1
Hypothetical protein.
   
  0.616
SDZ59567.1
TonB family C-terminal domain-containing protein.
   
  0.616
SDY50730.1
Outer membrane protein beta-barrel domain-containing protein.
  
  
  0.607
SDY97437.1
Iron complex outermembrane recepter protein.
  
     0.578
SDZ22690.1
Hypothetical protein.
       0.557
SDZ19348.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.556
SDY72271.1
OmpA-OmpF porin, OOP family.
  
  
  0.542
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.