STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ28046.1Transglutaminase-like enzyme, putative cysteine protease. (469 aa)    
Predicted Functional Partners:
SDZ42695.1
GMP synthase (glutamine-hydrolysing).
  
 
  0.694
SDY69102.1
Excinuclease ABC subunit B.
    
  0.619
SDZ32113.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
     0.610
SDZ54372.1
DNA polymerase-3 subunit epsilon.
    
  0.586
SDZ32027.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
     0.583
SDZ17342.1
Catalase.
   
   0.576
SDY67969.1
Excinuclease ABC subunit C.
    
  0.574
SDY44744.1
Excinuclease ABC subunit A.
    
  0.555
SDY64214.1
Excinuclease ABC subunit A.
    
  0.555
SDZ54111.1
GAF domain-containing protein.
  
     0.501
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.