STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ28529.1Unsaturated rhamnogalacturonyl hydrolase. (411 aa)    
Predicted Functional Partners:
SDZ28475.1
Protein of unknown function.
     0.983
SDZ28582.1
Polygalacturonase.
     0.982
SDZ28828.1
Polygalacturonase.
     0.977
SDZ28546.1
Pectinesterase.
 
  0.972
SDZ28563.1
Beta-xylosidase.
     0.961
SDZ13862.1
Pectate lyase superfamily protein.
     0.924
SDZ28598.1
Lysophospholipase L1.
  
  0.913
SDZ28761.1
Pectinesterase.
 
  0.885
SDZ28457.1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase.
 
   
 0.806
SDZ13878.1
Lysophospholipase L1.
 
  
  0.788
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.