STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ36774.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (325 aa)    
Predicted Functional Partners:
SDY67514.1
PPIC-type PPIASE domain-containing protein.
  
     0.726
SDY68072.1
Protein CcmA, bactofilin family.
 
     0.664
SDZ36762.1
alanyl-tRNA synthetase.
  
    0.578
SDZ01219.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
   
 0.557
SDY67998.1
Penicillin-binding protein 1A.
  
   
 0.431
SDZ36753.1
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
       0.422
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.