STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ43820.1Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. (508 aa)    
Predicted Functional Partners:
SDY45283.1
Glutamine--fructose-6-phosphate transaminase.
   
 0.845
SDY62844.1
Alanine racemase.
  
 
 0.666
SDZ36163.1
Argininosuccinate synthase.
  
 0.648
SDZ38115.1
Fe-S oxidoreductase.
   
 0.638
SDZ36212.1
N-succinyl-L-ornithine transcarbamylase.
  
 
 0.578
SDZ36195.1
Acetylornithine aminotransferase.
   
 
 0.560
SDY54072.1
Dihydroorotate oxidase A.
  
 0.500
SDY70549.1
N-acetyl-gamma-glutamyl-phosphate reductase.
  
 0.493
SDZ36180.1
N-acetyl-gamma-glutamyl-phosphate reductase.
  
 0.493
SDY70520.1
Acetylornithine aminotransferase apoenzyme.
   
 
 0.454
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.