STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ42839.1Murein L,D-transpeptidase YcbB/YkuD. (560 aa)    
Predicted Functional Partners:
SDZ42824.1
L,D-transpeptidase catalytic domain.
 
   
 0.631
SDY40843.1
Monofunctional biosynthetic peptidoglycan transglycosylase.
  
  
  0.540
SDZ43619.1
N-acetylmuramoyl-L-alanine amidase.
     
 0.539
SDY52039.1
Penicillin-binding protein 2.
     
 0.523
SDZ42855.1
glutamyl-tRNA reductase.
       0.451
SDZ01127.1
Protein of unknown function.
     
 0.404
SDZ45373.1
Cell division protein FtsI (penicillin-binding protein 3).
     
 0.404
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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