STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ47267.1Ribbon-helix-helix protein, copG family. (128 aa)    
Predicted Functional Partners:
SDZ47279.1
Relaxase/Mobilisation nuclease domain-containing protein.
       0.791
SDZ47289.1
Chromosome partitioning protein.
       0.791
SDZ47298.1
Hypothetical protein.
       0.773
SDZ47311.1
Hypothetical protein.
       0.773
SDZ47324.1
Protein of unknown function.
       0.743
SDZ47346.1
Hypothetical protein.
       0.564
SDZ47336.1
Protein of unknown function.
       0.563
SDZ47359.1
Bacteroides conjugation system ATPase, TraG family.
       0.548
SDZ47373.1
Hypothetical protein.
       0.547
SDZ47384.1
Hypothetical protein.
       0.547
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.