STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ47409.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
SDZ47373.1
Hypothetical protein.
       0.793
SDZ47384.1
Hypothetical protein.
       0.793
SDZ47396.1
Hypothetical protein.
       0.793
SDZ47424.1
Hypothetical protein.
       0.792
SDZ47336.1
Protein of unknown function.
       0.768
SDZ47346.1
Hypothetical protein.
       0.768
SDZ47359.1
Bacteroides conjugation system ATPase, TraG family.
       0.768
SDZ47436.1
Bacteroides conjugative transposon TraK protein.
       0.755
SDZ47503.1
Bacteroides conjugative transposon TraN protein.
       0.755
SDZ47490.1
Bacteroides conjugative transposon TraM protein.
       0.754
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.