STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ47827.1Starch-binding associating with outer membrane. (484 aa)    
Predicted Functional Partners:
SDZ47840.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   0.959
SDZ47816.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.859
SDZ29852.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   0.840
SDZ47853.1
Transcriptional regulator, TetR family.
 
     0.809
SDZ47802.1
Hypothetical protein.
 
     0.751
SDZ28511.1
Starch-binding associating with outer membrane.
  
 
   0.750
SDZ47902.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.746
SDY66092.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.723
SDZ24194.1
TonB-linked outer membrane protein, SusC/RagA family.
     0.721
SDZ13739.1
Starch-binding associating with outer membrane.
  
 
   0.716
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.