STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ50525.1Outer membrane transport energization protein ExbB. (229 aa)    
Predicted Functional Partners:
SDZ50518.1
Outer membrane transport energization protein ExbD.
 
 0.995
SDZ50511.1
Hypothetical protein.
 
 0.967
SDZ55956.1
Biopolymer transport protein ExbD.
 
 0.950
SDZ55966.1
Biopolymer transport protein ExbD.
 
 0.948
SDZ00993.1
Outer membrane transport energization protein TonB.
 
 0.895
SDZ59567.1
TonB family C-terminal domain-containing protein.
  
 0.842
SDZ48798.1
TonB family C-terminal domain-containing protein.
  
 0.831
SDZ50502.1
Dihydrofolate synthase / folylpolyglutamate synthase.
     
 0.816
SDZ50546.1
Tetratricopeptide repeat-containing protein.
 
  
 0.803
SDZ50534.1
Sporulation related domain-containing protein.
       0.793
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.