STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ54159.1DNA ligase-1. (530 aa)    
Predicted Functional Partners:
SDZ45614.1
DNA polymerase III, beta subunit.
   
 0.998
SDZ42726.1
Putative mRNA 3-end processing factor.
 
 0.996
SDY62182.1
DNA polymerase I.
  
 0.989
SDZ57402.1
DNA polymerase (family 10).
  
 0.961
SDZ54171.1
ATP-dependent helicase Lhr and Lhr-like helicase.
 
    0.951
SDY82614.1
Imidazoleglycerol-phosphate dehydratase.
   
 0.939
SDZ57180.1
Hypothetical protein.
   
 0.917
SDY53434.1
Exonuclease SbcC.
   
 0.905
SDY53458.1
Exodeoxyribonuclease I subunit D.
   
 0.894
SDY43688.1
Exodeoxyribonuclease-3.
  
 
 0.887
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.