STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ54026.1Cold-shock DNA-binding protein family. (153 aa)    
Predicted Functional Partners:
SDZ53631.1
ATP-dependent helicase HrpB.
    
  0.828
SDZ56364.1
RNA polymerase Rpb6.
   
 
 0.786
SDZ57172.1
RNAse R.
    
 0.781
SDY74329.1
DNA-directed RNA polymerase subunit beta.
   
 
 0.774
SDZ53177.1
Polyribonucleotide nucleotidyltransferase.
    
 0.733
SDZ22630.1
Leucine-rich repeat (LRR) protein.
    
  0.730
SDY75240.1
DNA-directed RNA polymerase subunit alpha.
   
 
 0.714
SDY43688.1
Exodeoxyribonuclease-3.
   
 0.699
SDZ00716.1
3'-5' exonuclease.
    
  0.687
SDY74411.1
SSU ribosomal protein S12P.
   
 
 0.683
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.