STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ54690.1Putative DNA-binding domain-containing protein. (143 aa)    
Predicted Functional Partners:
SDY69123.1
Putative DNA-binding domain-containing protein.
  
     0.772
SDZ54676.1
Hypothetical protein.
       0.534
SDZ12050.1
Protein of unknown function.
  
     0.473
SDZ32753.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.415
SDZ32662.1
O-Antigen ligase.
  
     0.414
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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