STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ57711.1Alginate export. (435 aa)    
Predicted Functional Partners:
SDZ23223.1
Cytochrome c nitrite reductase small subunit.
 
   0.863
SDZ57689.1
Rubredoxin.
 
     0.844
SDZ57696.1
Ferredoxin-nitrate reductase.
 
     0.784
SDZ57703.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
     0.725
SDZ47840.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.723
SDZ49360.1
Outer membrane protein OmpA.
   
 0.720
SDY51158.1
Outer membrane protein OmpA.
   
 0.718
SDZ48975.1
Outer membrane porin, OprD family.
   
  0.677
SDZ49060.1
Hypothetical protein.
   
  0.677
SDY67537.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
 0.668
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.