STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKO46466.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
KKO46465.1
Curli production assembly protein CsgF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KKO46464.1
Curli production assembly protein CsgE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.976
KKO46463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.947
KKO46467.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.810
KKO46715.1
Minor curlin subunit CsgB, nucleation component of curlin monomers; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.741
KKO46462.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
 
    0.621
KKO44919.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
KKO45223.1
Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
KKO46310.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
Your Current Organism:
Arsukibacterium ikkense
NCBI taxonomy Id: 336831
Other names: A. ikkense, Arsukibacterium ikkense Schmidt et al. 2016, DSM 17999, LMG 23455, LMG:23455, strain GCM72
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.