STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKO46164.1General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family. (63 aa)    
Predicted Functional Partners:
KKO47145.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.855
KKO47148.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.736
KKO45266.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.656
KKO45075.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.640
KKO45118.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.622
KKO45121.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.608
KKO45857.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.597
KKO46865.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.481
KKO47055.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.453
KKO47062.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.453
Your Current Organism:
Arsukibacterium ikkense
NCBI taxonomy Id: 336831
Other names: A. ikkense, Arsukibacterium ikkense Schmidt et al. 2016, DSM 17999, LMG 23455, LMG:23455, strain GCM72
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.