STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpXPeptidase M15; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (235 aa)    
Predicted Functional Partners:
KKO45011.1
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.710
KKO45009.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
KKO43875.1
Dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.651
KKO45858.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.634
KKO45073.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.628
KKO45024.1
N-acetyl-anhydromuranmyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.502
KKO45389.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.498
KKO45012.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.455
KKO45035.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.425
Your Current Organism:
Arsukibacterium ikkense
NCBI taxonomy Id: 336831
Other names: A. ikkense, Arsukibacterium ikkense Schmidt et al. 2016, DSM 17999, LMG 23455, LMG:23455, strain GCM72
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