STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UREG_04233Uncharacterized protein. (307 aa)    
Predicted Functional Partners:
UREG_03913
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 0.997
UREG_06980
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.996
UREG_00711
PAT1 domain-containing protein.
    
 0.967
UREG_02201
Uncharacterized protein.
    
 0.941
UREG_04975
Nudix hydrolase domain-containing protein.
    
 0.941
UREG_03661
YjeF N-terminal domain-containing protein.
   
 0.939
UREG_04944
Uncharacterized protein.
   
 0.939
UREG_03648
ATP-dependent helicase NAM7.
    
 0.880
UREG_07354
SurE domain-containing protein.
    
 
 0.862
UREG_06290
Uncharacterized protein.
    
 0.857
Your Current Organism:
Uncinocarpus reesii
NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704
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