UREG_04341 protein (Uncinocarpus reesii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UREG_04341

Uncharacterized protein. (713 aa)

Predicted Functional Partners:

UREG_03648

0.991

UREG_04730

0.989

UREG_07752

0.940

UREG_01752

0.829

UREG_03140

0.803

UREG_06557

0.774

UREG_05499

0.739

UREG_06382

0.716

UREG_04244

0.672

UREG_02031

0.626

Your Current Organism:

Uncinocarpus reesii

NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UREG_01752	UREG_03140	C4JJE5	C4JPG9	RNA-binding protein 8A.	Uncharacterized protein.	0.713
UREG_01752	UREG_03648	C4JJE5	C4JLE0	RNA-binding protein 8A.	ATP-dependent helicase NAM7.	0.891
UREG_01752	UREG_04341	C4JJE5	C4JND5	RNA-binding protein 8A.	Uncharacterized protein.	0.829
UREG_01752	UREG_04730	C4JJE5	C4JQR3	RNA-binding protein 8A.	RRM domain-containing protein.	0.958
UREG_01752	UREG_06382	C4JJE5	C4JXK9	RNA-binding protein 8A.	Uncharacterized protein.	0.990
UREG_01752	UREG_06557	C4JJE5	C4JVG5	RNA-binding protein 8A.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.705
UREG_02031	UREG_03648	C4JK74	C4JLE0	Protein phosphatase PP2A regulatory subunit A.	ATP-dependent helicase NAM7.	0.641
UREG_02031	UREG_04341	C4JK74	C4JND5	Protein phosphatase PP2A regulatory subunit A.	Uncharacterized protein.	0.626
UREG_02031	UREG_06557	C4JK74	C4JVG5	Protein phosphatase PP2A regulatory subunit A.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.655
UREG_03140	UREG_01752	C4JPG9	C4JJE5	Uncharacterized protein.	RNA-binding protein 8A.	0.713
UREG_03140	UREG_03648	C4JPG9	C4JLE0	Uncharacterized protein.	ATP-dependent helicase NAM7.	0.878
UREG_03140	UREG_04341	C4JPG9	C4JND5	Uncharacterized protein.	Uncharacterized protein.	0.803
UREG_03140	UREG_04730	C4JPG9	C4JQR3	Uncharacterized protein.	RRM domain-containing protein.	0.851
UREG_03140	UREG_06382	C4JPG9	C4JXK9	Uncharacterized protein.	Uncharacterized protein.	0.709
UREG_03140	UREG_06557	C4JPG9	C4JVG5	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.887
UREG_03648	UREG_01752	C4JLE0	C4JJE5	ATP-dependent helicase NAM7.	RNA-binding protein 8A.	0.891
UREG_03648	UREG_02031	C4JLE0	C4JK74	ATP-dependent helicase NAM7.	Protein phosphatase PP2A regulatory subunit A.	0.641
UREG_03648	UREG_03140	C4JLE0	C4JPG9	ATP-dependent helicase NAM7.	Uncharacterized protein.	0.878
UREG_03648	UREG_04341	C4JLE0	C4JND5	ATP-dependent helicase NAM7.	Uncharacterized protein.	0.991
UREG_03648	UREG_04730	C4JLE0	C4JQR3	ATP-dependent helicase NAM7.	RRM domain-containing protein.	0.999