STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UREG_03098Uncharacterized protein. (720 aa)    
Predicted Functional Partners:
UREG_02728
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.648
UREG_07175
DNA-directed RNA polymerases II 24 kDa polypeptide.
    
 0.628
UREG_00664
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.627
UREG_00801
RPOL9 domain-containing protein.
    
 0.627
UREG_01395
DNA-directed RNA polymerase II 16 kDa polypeptide.
    
 0.627
UREG_06452
DNA-directed RNA polymerase II 45 kDa polypeptide.
    
 0.627
UREG_07793
DNA-directed RNA polymerase II 13.3 kDa polypeptide.
    
 0.627
UREG_07398
Transcription initiation factor IIB.
    
 0.606
UREG_01427
Transcription elongation factor S-II.
    
 0.603
UREG_07447
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
    
 0.599
Your Current Organism:
Uncinocarpus reesii
NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.