STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UREG_05307G-patch domain-containing protein. (774 aa)    
Predicted Functional Partners:
UREG_05213
Pre-mRNA splicing factor ATP-dependent RNA helicase PRP43.
   
 0.996
UREG_03429
Pre-mRNA splicing factor CLF1.
   
   0.984
UREG_04034
Cell cycle control protein cwf14.
    
   0.983
UREG_01472
116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP-specific protein).
   
 
 0.965
UREG_01779
Pre-mRNA processing splicing factor 8.
    
 
 0.948
UREG_02293
WD_REPEATS_REGION domain-containing protein.
   
 0.931
UREG_00677
Uncharacterized protein.
    
 
 0.909
UREG_03916
Nuclear protein SkiP.
    
 
 0.882
UREG_05246
Pre-mRNA splicing factor syf-1.
   
 
 0.882
UREG_02330
Sm domain-containing protein.
    
   0.875
Your Current Organism:
Uncinocarpus reesii
NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.