STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UREG_05935CBF domain-containing protein. (1095 aa)    
Predicted Functional Partners:
UREG_02897
Uncharacterized protein.
   
 
 0.995
UREG_00390
Uncharacterized protein.
   
 
 0.984
UREG_05611
Uncharacterized protein.
   
 
 0.960
UREG_04023
Nucleolar protein NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.956
UREG_06347
ATP-dependent helicase.
   
 
 0.956
UREG_02446
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.951
UREG_04895
Noc3p protein.
   
 
 0.948
UREG_01534
Brix domain-containing protein.
   
 
 0.941
UREG_00580
RNA helicase.
   
 
 0.939
UREG_07323
Brix domain-containing protein.
   
   0.930
Your Current Organism:
Uncinocarpus reesii
NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704
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