UREG_06787 protein (Uncinocarpus reesii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UREG_06787

Uncharacterized protein. (964 aa)

Predicted Functional Partners:

UREG_03984

0.759

UREG_07764

0.759

UREG_00232

0.753

UREG_07240

0.720

UREG_05321

0.653

UREG_05002

0.636

UREG_02330

0.617

UREG_02525

0.615

UREG_00311

0.612

UREG_00987

0.606

Your Current Organism:

Uncinocarpus reesii

NCBI taxonomy Id: 336963
Other names: U. reesii 1704, Uncinocarpus reesii 1704

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UREG_00232	UREG_06787	C4JL17	C4JW45	SB domain-containing protein.	Uncharacterized protein.	0.753
UREG_00311	UREG_03984	C4JDE6	C4JMC6	Uncharacterized protein.	Serine/threonine-protein kinase 24.	0.428
UREG_00311	UREG_05321	C4JDE6	C4JS82	Uncharacterized protein.	Serine/threonine-protein kinase cot-1.	0.915
UREG_00311	UREG_06787	C4JDE6	C4JW45	Uncharacterized protein.	Uncharacterized protein.	0.612
UREG_00311	UREG_07240	C4JDE6	C4JYI9	Uncharacterized protein.	Conidiophore development protein hymA.	0.662
UREG_00311	UREG_07764	C4JDE6	C4K013	Uncharacterized protein.	Serine/threonine-protein kinase 24.	0.428
UREG_00987	UREG_02330	C4JFH3	C4JFA8	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Sm domain-containing protein.	0.999
UREG_00987	UREG_05002	C4JFH3	C4JRB3	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
UREG_00987	UREG_06787	C4JFH3	C4JW45	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.606
UREG_02330	UREG_00987	C4JFA8	C4JFH3	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
UREG_02330	UREG_05002	C4JFA8	C4JRB3	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
UREG_02330	UREG_06787	C4JFA8	C4JW45	Sm domain-containing protein.	Uncharacterized protein.	0.617
UREG_02525	UREG_06787	C4JGC7	C4JW45	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.615
UREG_03984	UREG_00311	C4JMC6	C4JDE6	Serine/threonine-protein kinase 24.	Uncharacterized protein.	0.428
UREG_03984	UREG_05321	C4JMC6	C4JS82	Serine/threonine-protein kinase 24.	Serine/threonine-protein kinase cot-1.	0.592
UREG_03984	UREG_06787	C4JMC6	C4JW45	Serine/threonine-protein kinase 24.	Uncharacterized protein.	0.759
UREG_03984	UREG_07240	C4JMC6	C4JYI9	Serine/threonine-protein kinase 24.	Conidiophore development protein hymA.	0.772
UREG_05002	UREG_00987	C4JRB3	C4JFH3	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
UREG_05002	UREG_02330	C4JRB3	C4JFA8	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
UREG_05002	UREG_06787	C4JRB3	C4JW45	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.636