PEX11B protein (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEX11B

Peroxisomal biogenesis factor 11 beta. (245 aa)

Predicted Functional Partners:

PEX19

0.966

PEX11G

0.928

PEX14

0.912

PEX13

0.905

PEX12

0.852

PEX3

0.834

PEX11A

0.825

PEX16

0.786

FAM185A

0.774

FIS1

0.738

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM185A	FIS1	ENSCANP00000028452	ENSCANP00000001052	Family with sequence similarity 185 member A.	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	0.603
FAM185A	PEX11A	ENSCANP00000028452	ENSCANP00000033257	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 11 alpha.	0.774
FAM185A	PEX11B	ENSCANP00000028452	ENSCANP00000001937	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 11 beta.	0.774
FAM185A	PEX11G	ENSCANP00000028452	ENSCANP00000009798	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 11 gamma.	0.774
FAM185A	PEX12	ENSCANP00000028452	ENSCANP00000021008	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 12.	0.912
FAM185A	PEX13	ENSCANP00000028452	ENSCANP00000004308	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 13.	0.979
FAM185A	PEX16	ENSCANP00000028452	ENSCANP00000005742	Family with sequence similarity 185 member A.	Peroxisomal membrane protein PEX16.	0.780
FAM185A	PEX19	ENSCANP00000028452	ENSCANP00000007316	Family with sequence similarity 185 member A.	Uncharacterized protein.	0.969
FAM185A	PEX3	ENSCANP00000028452	ENSCANP00000029067	Family with sequence similarity 185 member A.	Peroxisomal biogenesis factor 3.	0.841
FIS1	FAM185A	ENSCANP00000001052	ENSCANP00000028452	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Family with sequence similarity 185 member A.	0.603
FIS1	PEX11A	ENSCANP00000001052	ENSCANP00000033257	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 11 alpha.	0.808
FIS1	PEX11B	ENSCANP00000001052	ENSCANP00000001937	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 11 beta.	0.738
FIS1	PEX11G	ENSCANP00000001052	ENSCANP00000009798	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 11 gamma.	0.607
FIS1	PEX12	ENSCANP00000001052	ENSCANP00000021008	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 12.	0.714
FIS1	PEX13	ENSCANP00000001052	ENSCANP00000004308	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 13.	0.765
FIS1	PEX14	ENSCANP00000001052	ENSCANP00000015206	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 14.	0.737
FIS1	PEX16	ENSCANP00000001052	ENSCANP00000005742	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal membrane protein PEX16.	0.733
FIS1	PEX19	ENSCANP00000001052	ENSCANP00000007316	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Uncharacterized protein.	0.819
FIS1	PEX3	ENSCANP00000001052	ENSCANP00000029067	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Peroxisomal biogenesis factor 3.	0.810
PEX11A	FAM185A	ENSCANP00000033257	ENSCANP00000028452	Peroxisomal biogenesis factor 11 alpha.	Family with sequence similarity 185 member A.	0.774