ENSCANP00000005502 protein (Colobus angolensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCANP00000005502

Uncharacterized protein. (561 aa)

Predicted Functional Partners:

PES1

0.898

NOP58

0.804

BOP1

0.790

EBNA1BP2

0.788

GTPBP4

0.766

GNL3

0.754

DKC1

0.753

DDX56

0.746

GNL2

0.736

SF3B1

0.731

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DDX56	ENSCANP00000030156	ENSCANP00000009540	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DEAD-box helicase 56.	0.954
BOP1	DKC1	ENSCANP00000030156	ENSCANP00000009214	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Dyskerin pseudouridine synthase 1.	0.954
BOP1	EBNA1BP2	ENSCANP00000030156	ENSCANP00000010099	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	EBNA1 binding protein 2.	0.997
BOP1	ENSCANP00000005502	ENSCANP00000030156	ENSCANP00000005502	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.790
BOP1	GNL2	ENSCANP00000030156	ENSCANP00000026701	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.990
BOP1	GNL3	ENSCANP00000030156	ENSCANP00000032599	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	G protein nucleolar 3.	0.991
BOP1	GTPBP4	ENSCANP00000030156	ENSCANP00000004137	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.995
BOP1	NOP58	ENSCANP00000030156	ENSCANP00000002803	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP58 ribonucleoprotein.	0.987
BOP1	PES1	ENSCANP00000030156	ENSCANP00000032660	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.999
DDX56	BOP1	ENSCANP00000009540	ENSCANP00000030156	DEAD-box helicase 56.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.954
DDX56	DKC1	ENSCANP00000009540	ENSCANP00000009214	DEAD-box helicase 56.	Dyskerin pseudouridine synthase 1.	0.900
DDX56	EBNA1BP2	ENSCANP00000009540	ENSCANP00000010099	DEAD-box helicase 56.	EBNA1 binding protein 2.	0.976
DDX56	ENSCANP00000005502	ENSCANP00000009540	ENSCANP00000005502	DEAD-box helicase 56.	Uncharacterized protein.	0.746
DDX56	GNL2	ENSCANP00000009540	ENSCANP00000026701	DEAD-box helicase 56.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.913
DDX56	GNL3	ENSCANP00000009540	ENSCANP00000032599	DEAD-box helicase 56.	G protein nucleolar 3.	0.880
DDX56	GTPBP4	ENSCANP00000009540	ENSCANP00000004137	DEAD-box helicase 56.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.923
DDX56	NOP58	ENSCANP00000009540	ENSCANP00000002803	DEAD-box helicase 56.	NOP58 ribonucleoprotein.	0.961
DDX56	PES1	ENSCANP00000009540	ENSCANP00000032660	DEAD-box helicase 56.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.949
DDX56	SF3B1	ENSCANP00000009540	ENSCANP00000012604	DEAD-box helicase 56.	Splicing factor 3b subunit 1.	0.558
DKC1	BOP1	ENSCANP00000009214	ENSCANP00000030156	Dyskerin pseudouridine synthase 1.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.954