NPAT protein (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NPAT

Nuclear protein, coactivator of histone transcription. (1428 aa)

Predicted Functional Partners:

HINFP

0.558

IQCB1

0.558

CDK2

0.553

CASP8AP2

0.547

LSM11

0.537

LSM10

0.534

CRAMP1

0.477

RBM46

0.462

ADGRA3

0.459

GXYLT1

0.458

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRA3	GXYLT1	ENSCANP00000026252	ENSCANP00000022425	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Glucoside xylosyltransferase 1.	0.409
ADGRA3	NPAT	ENSCANP00000026252	ENSCANP00000011224	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Nuclear protein, coactivator of histone transcription.	0.459
ADGRA3	RBM46	ENSCANP00000026252	ENSCANP00000030804	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	RNA binding motif protein 46.	0.422
CASP8AP2	LSM11	ENSCANP00000037879	ENSCANP00000034205	Caspase 8 associated protein 2.	LSM11, U7 small nuclear RNA associated.	0.569
CASP8AP2	NPAT	ENSCANP00000037879	ENSCANP00000011224	Caspase 8 associated protein 2.	Nuclear protein, coactivator of histone transcription.	0.547
CDK2	NPAT	ENSCANP00000016039	ENSCANP00000011224	Cyclin dependent kinase 2; Belongs to the protein kinase superfamily.	Nuclear protein, coactivator of histone transcription.	0.553
CRAMP1	NPAT	ENSCANP00000027633	ENSCANP00000011224	Cramped chromatin regulator homolog 1.	Nuclear protein, coactivator of histone transcription.	0.477
GXYLT1	ADGRA3	ENSCANP00000022425	ENSCANP00000026252	Glucoside xylosyltransferase 1.	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	0.409
GXYLT1	NPAT	ENSCANP00000022425	ENSCANP00000011224	Glucoside xylosyltransferase 1.	Nuclear protein, coactivator of histone transcription.	0.458
GXYLT1	RBM46	ENSCANP00000022425	ENSCANP00000030804	Glucoside xylosyltransferase 1.	RNA binding motif protein 46.	0.420
HINFP	LSM10	ENSCANP00000036060	ENSCANP00000005893	Histone H4 transcription factor.	LSM10, U7 small nuclear RNA associated.	0.539
HINFP	NPAT	ENSCANP00000036060	ENSCANP00000011224	Histone H4 transcription factor.	Nuclear protein, coactivator of histone transcription.	0.558
IQCB1	NPAT	ENSCANP00000037971	ENSCANP00000011224	IQ motif containing B1.	Nuclear protein, coactivator of histone transcription.	0.558
LSM10	HINFP	ENSCANP00000005893	ENSCANP00000036060	LSM10, U7 small nuclear RNA associated.	Histone H4 transcription factor.	0.539
LSM10	LSM11	ENSCANP00000005893	ENSCANP00000034205	LSM10, U7 small nuclear RNA associated.	LSM11, U7 small nuclear RNA associated.	0.977
LSM10	NPAT	ENSCANP00000005893	ENSCANP00000011224	LSM10, U7 small nuclear RNA associated.	Nuclear protein, coactivator of histone transcription.	0.534
LSM11	CASP8AP2	ENSCANP00000034205	ENSCANP00000037879	LSM11, U7 small nuclear RNA associated.	Caspase 8 associated protein 2.	0.569
LSM11	LSM10	ENSCANP00000034205	ENSCANP00000005893	LSM11, U7 small nuclear RNA associated.	LSM10, U7 small nuclear RNA associated.	0.977
LSM11	NPAT	ENSCANP00000034205	ENSCANP00000011224	LSM11, U7 small nuclear RNA associated.	Nuclear protein, coactivator of histone transcription.	0.537
NPAT	ADGRA3	ENSCANP00000011224	ENSCANP00000026252	Nuclear protein, coactivator of histone transcription.	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	0.459