ENSCANP00000016262 protein (Colobus angolensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCANP00000016262

Uncharacterized protein. (104 aa)

Predicted Functional Partners:

CYC1

0.729

NDUFV1

0.726

NDUFS8

0.699

ATP5F1D

0.609

DDX6

0.557

LSM12

0.530

NDUFB7

0.497

QSER1

0.463

B4GAT1

0.459

KIFBP

0.441

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1D	CYC1	ENSCANP00000017420	ENSCANP00000017799	ATP synthase F1 subunit delta.	Cytochrome c1.	0.989
ATP5F1D	ENSCANP00000016262	ENSCANP00000017420	ENSCANP00000016262	ATP synthase F1 subunit delta.	Uncharacterized protein.	0.609
ATP5F1D	NDUFB7	ENSCANP00000017420	ENSCANP00000018997	ATP synthase F1 subunit delta.	NADH:ubiquinone oxidoreductase subunit B7.	0.927
ATP5F1D	NDUFS8	ENSCANP00000017420	ENSCANP00000039598	ATP synthase F1 subunit delta.	NADH:ubiquinone oxidoreductase core subunit S8.	0.968
ATP5F1D	NDUFV1	ENSCANP00000017420	ENSCANP00000038628	ATP synthase F1 subunit delta.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.957
B4GAT1	ENSCANP00000016262	ENSCANP00000013979	ENSCANP00000016262	Beta-1,4-glucuronyltransferase 1.	Uncharacterized protein.	0.459
B4GAT1	QSER1	ENSCANP00000013979	ENSCANP00000026364	Beta-1,4-glucuronyltransferase 1.	Glutamine and serine rich 1.	0.469
CYC1	ATP5F1D	ENSCANP00000017799	ENSCANP00000017420	Cytochrome c1.	ATP synthase F1 subunit delta.	0.989
CYC1	ENSCANP00000016262	ENSCANP00000017799	ENSCANP00000016262	Cytochrome c1.	Uncharacterized protein.	0.729
CYC1	NDUFB7	ENSCANP00000017799	ENSCANP00000018997	Cytochrome c1.	NADH:ubiquinone oxidoreductase subunit B7.	0.991
CYC1	NDUFS8	ENSCANP00000017799	ENSCANP00000039598	Cytochrome c1.	NADH:ubiquinone oxidoreductase core subunit S8.	0.999
CYC1	NDUFV1	ENSCANP00000017799	ENSCANP00000038628	Cytochrome c1.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999
DDX6	ENSCANP00000016262	ENSCANP00000037964	ENSCANP00000016262	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.557
DDX6	LSM12	ENSCANP00000037964	ENSCANP00000039331	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	LSM12 homolog.	0.930
ENSCANP00000016262	ATP5F1D	ENSCANP00000016262	ENSCANP00000017420	Uncharacterized protein.	ATP synthase F1 subunit delta.	0.609
ENSCANP00000016262	B4GAT1	ENSCANP00000016262	ENSCANP00000013979	Uncharacterized protein.	Beta-1,4-glucuronyltransferase 1.	0.459
ENSCANP00000016262	CYC1	ENSCANP00000016262	ENSCANP00000017799	Uncharacterized protein.	Cytochrome c1.	0.729
ENSCANP00000016262	DDX6	ENSCANP00000016262	ENSCANP00000037964	Uncharacterized protein.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.557
ENSCANP00000016262	KIFBP	ENSCANP00000016262	ENSCANP00000034087	Uncharacterized protein.	KIF1 binding protein.	0.441
ENSCANP00000016262	LSM12	ENSCANP00000016262	ENSCANP00000039331	Uncharacterized protein.	LSM12 homolog.	0.530