Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NT96_08080Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
NT96_07555
TPR repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.801
NT96_08385
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.769
NT96_07685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
NT96_03630
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.725
NT96_01050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.698
NT96_01100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
NT96_03635
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
NT96_08160
1,4-beta-N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
NT96_05905
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
NT96_08460
Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
Your Current Organism:
Oenococcus kitaharae
NCBI taxonomy Id: 336988
Other names: DSM 17330, JCM 13282, NRIC 0645, O. kitaharae, Oenococcus kitaharae Endo and Okada 2006
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