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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspISmall acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family. (67 aa)    
Predicted Functional Partners:
OEG00249.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
OEF99891.1
Spore coat protein GerQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
OEG00180.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
OEF99283.1
precorrin-3B C(17)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
OEF99612.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
OEF99871.1
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
OEF96461.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
OEF98068.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.715
OEF99433.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
OEF99647.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
Your Current Organism:
Vulcanibacillus modesticaldus
NCBI taxonomy Id: 337097
Other names: Bacillus sp. BR, DSM 14931, JCM 12998, V. modesticaldus, strain Br
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