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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OEF99389.1Sporulation protein YunB; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (277 aa)    
Predicted Functional Partners:
OEG00349.1
Sporulation integral membrane protein YlbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
OEG00305.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
OEF99847.1
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.706
OEF99532.1
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.
  
     0.700
OEF99109.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
OEF97249.1
Sporulation protein YtfJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.698
OEF99535.1
YlmC/YmxH family sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.633
OEF96933.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.627
OEG00215.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
OEF95511.1
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
Your Current Organism:
Vulcanibacillus modesticaldus
NCBI taxonomy Id: 337097
Other names: Bacillus sp. BR, DSM 14931, JCM 12998, V. modesticaldus, strain Br
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