OEF97240.1 protein (Vulcanibacillus modesticaldus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OEF97240.1

Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)

Predicted Functional Partners:

OEF97239.1

0.962

OEF97241.1

0.896

OEF97242.1

0.849

OEF97243.1

0.746

OEF97244.1

0.730

OEF99422.1

0.719

OEF99289.1

0.718

OEF97238.1

0.671

spoIIAB

0.665

OEF95513.1

0.650

Your Current Organism:

Vulcanibacillus modesticaldus

NCBI taxonomy Id: 337097
Other names: Bacillus sp. BR, DSM 14931, JCM 12998, V. modesticaldus, strain Br

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OEF95513.1	OEF97238.1	BHF71_04800	BHF71_03630	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.571
OEF95513.1	OEF97239.1	BHF71_04800	BHF71_03635	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
OEF95513.1	OEF97240.1	BHF71_04800	BHF71_03640	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
OEF95513.1	OEF97241.1	BHF71_04800	BHF71_03645	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
OEF95513.1	OEF97242.1	BHF71_04800	BHF71_03650	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
OEF95513.1	OEF99422.1	BHF71_04800	BHF71_01575	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
OEF95513.1	spoIIAB	BHF71_04800	BHF71_03625	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.446
OEF97238.1	OEF95513.1	BHF71_03630	BHF71_04800	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
OEF97238.1	OEF97239.1	BHF71_03630	BHF71_03635	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
OEF97238.1	OEF97240.1	BHF71_03630	BHF71_03640	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
OEF97238.1	OEF97241.1	BHF71_03630	BHF71_03645	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
OEF97238.1	OEF97242.1	BHF71_03630	BHF71_03650	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OEF97238.1	OEF97243.1	BHF71_03630	BHF71_03655	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
OEF97238.1	OEF97244.1	BHF71_03630	BHF71_03660	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
OEF97238.1	spoIIAB	BHF71_03630	BHF71_03625	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.993
OEF97239.1	OEF95513.1	BHF71_03635	BHF71_04800	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
OEF97239.1	OEF97238.1	BHF71_03635	BHF71_03630	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.656
OEF97239.1	OEF97240.1	BHF71_03635	BHF71_03640	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
OEF97239.1	OEF97241.1	BHF71_03635	BHF71_03645	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
OEF97239.1	OEF97242.1	BHF71_03635	BHF71_03650	Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762

page 1 of 4

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About