STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnaATyrosine phenol-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the beta-eliminating lyase family. (459 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.668
OEG00158.1
Na+-dependent transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.565
OEG00160.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
OEF99196.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.451
BHF71_10990
Integrase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.451
Your Current Organism:
Vulcanibacillus modesticaldus
NCBI taxonomy Id: 337097
Other names: Bacillus sp. BR, DSM 14931, JCM 12998, V. modesticaldus, strain Br
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