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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR9_1237Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. (296 aa)    
Predicted Functional Partners:
mutM
Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
  
  
0.933
KTR9_1730
Formamidopyrimidine-DNA glycosylase.
  
   
 0.866
polA
DNA polymerase I - 3'-5' exonuclease and polymerase domains; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.826
KTR9_1236
3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase.
       0.789
KTR9_1238
Short-chain dehydorgenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.782
KTR9_1235
ABC-type uncharacterized transport system, permease component.
       0.648
KTR9_0350
ATP-dependent DNA ligase.
 
  
 0.621
KTR9_0861
A/G-specific DNA glycosylase.
  
  
 0.601
KTR9_2381
5'-3' exonuclease (including N-terminal domain of PolI).
 
  
 0.586
KTR9_3041
Nuclease subunit of the excinuclease complex.
  
  
 0.556
Your Current Organism:
Gordonia sp. KTR9
NCBI taxonomy Id: 337191
Other names: G. sp. KTR9
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