STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR9_1663DNA-directed RNA polymerase specialized sigma subunit, sigma24 -like protein; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)    
Predicted Functional Partners:
KTR9_1664
Hypothetical protein.
 
 
 
 0.987
KTR9_4747
DNA-directed RNA polymerase specialized sigma subunit, sigma24 -like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.848
KTR9_3554
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.744
KTR9_1662
Hypothetical protein.
       0.743
KTR9_3553
Anti-sigma factor.
 
 
 0.693
KTR9_1794
DNA-directed RNA polymerase specialized sigma subunit, sigma24 -like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.664
KTR9_1024
DNA-directed RNA polymerase specialized sigma subunit, sigma24 -like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.651
KTR9_2321
Cell wall-associated hydrolases (invasion- associated proteins).
  
  
 0.627
KTR9_4026
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.597
KTR9_4128
DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family.
  
  
 0.597
Your Current Organism:
Gordonia sp. KTR9
NCBI taxonomy Id: 337191
Other names: G. sp. KTR9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.