Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KTR9_1908Hypothetical protein. (116 aa)    
Predicted Functional Partners:
KTR9_1909
Glucitol operon activator.
       0.868
KTR9_1035
Copper resistance protein CopC.
  
    0.741
KTR9_3046
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
   
 0.725
KTR9_3050
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
     0.717
KTR9_1945
Putative membrane protein.
  
     0.715
KTR9_0929
ResB protein required for cytochrome c biosynthesis.
  
     0.694
KTR9_3985
Hypothetical protein.
  
     0.684
KTR9_1907
Glycosyltransferase.
     
 0.577
ctaB
Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.571
KTR9_3047
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
  
   
 0.551
Your Current Organism:
Gordonia sp. KTR9
NCBI taxonomy Id: 337191
Other names: G. sp. KTR9
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