Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KTR9_3203Permease, MFS superfamily. (447 aa)    
Predicted Functional Partners:
KTR9_3202
Shikimate 5-dehydrogenase.
 
  
 0.743
KTR9_3205
Protocatechuate 3,4-dioxygenase beta subunit.
     
 0.585
KTR9_3201
Transcriptional regulator.
 
   
 0.572
KTR9_3200
Putative 4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.565
KTR9_3206
Protocatechuate 3,4-dioxygenase beta subunit.
     
 0.563
KTR9_2133
Phosphotransferase system, fructose-specific IIC component.
  
  
 0.486
KTR9_0088
Hypothetical protein.
  
  
 0.461
KTR9_4351
Permease, MSF superfamily.
 
  
0.460
KTR9_4408
Permease, MFS superfamily.
 
  
 0.425
KTR9_1424
Putative phosphatase / phosphohexomutase.
  
  
 0.424
Your Current Organism:
Gordonia sp. KTR9
NCBI taxonomy Id: 337191
Other names: G. sp. KTR9
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