STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR9_3205Protocatechuate 3,4-dioxygenase beta subunit. (259 aa)    
Predicted Functional Partners:
KTR9_3206
Protocatechuate 3,4-dioxygenase beta subunit.
 
 
0.998
KTR9_3207
Adenylosuccinate lyase.
 
 
 0.998
KTR9_3208
Gamma-carboxymuconolactone decarboxylase family protein.
 
  
 0.977
KTR9_3200
Putative 4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.765
KTR9_3204
Transcriptional regulator.
 
  
 0.742
KTR9_4094
3-oxoadipate enol-lactonase.
 
   
 0.674
KTR9_4085
Catechol 1,2-dioxygenase.
 
  
0.652
KTR9_4093
Acyl CoA:acetate / 3-ketoacid CoA transferase, alpha subunit.
  
  
 0.649
KTR9_3202
Shikimate 5-dehydrogenase.
 
   
 0.617
KTR9_4084
Muconolactone delta-isomerase.
 
  
 0.536
Your Current Organism:
Gordonia sp. KTR9
NCBI taxonomy Id: 337191
Other names: G. sp. KTR9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.