STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR9_4304ThiJ/PfpI domain-containing protein. (240 aa)    
Predicted Functional Partners:
KTR9_4303
Transcriptional regulator.
 
    
0.765
KTR9_2517
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
     0.620
KTR9_4305
Hypothetical protein.
       0.589
KTR9_4302
Universal stress protein UspA-related nucleotide-binding protein.
  
  
 0.569
lexA
SOS-response transcriptional repressors (RecA- mediated autopeptidases); Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.494
KTR9_2518
Nicotinamidase-like amidases.
 
    0.482
KTR9_0981
AraC-type DNA-binding domain-containing protein.
 
 
 0.441
KTR9_4306
Hypothetical protein.
  
    0.431
KTR9_0768
Glyoxalase/ bleomycin resistance protein/ dioxygenase.
 
    0.418
KTR9_1018
AraC-type DNA-binding domain-containing protein.
 
 
 0.414
Your Current Organism:
Gordonia sp. KTR9
NCBI taxonomy Id: 337191
Other names: G. sp. KTR9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.