STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00032300ALBINO3-like protein 1, chloroplastic. (559 aa)    
Predicted Functional Partners:
CKAN_01306700
SecY/SEC61-alpha family; Belongs to the SecY/SEC61-alpha family.
   
 0.938
CKAN_02064900
Protein transport protein Sec61 subunit alpha-like protein; Belongs to the SecY/SEC61-alpha family.
   
 0.938
CKAN_02477900
Inner membrane protein PPF-1, chloroplastic.
  
 
 
0.935
CKAN_02252200
Mitochondrial inner membrane protein OXA1-like protein.
  
  
0.886
CKAN_02586200
Mitochondrial inner membrane protein OXA1-like protein.
  
  
0.886
CKAN_00890200
Mitochondrial inner membrane protein OXA1-like protein.
     
0.877
CKAN_00374900
Preprotein translocase subunit SCY1, chloroplastic isoform X1.
   
 
 0.865
CKAN_02293500
Tim44-like domain-containing protein.
   
 
 0.864
CKAN_01974200
Signal recognition particle protein.
    
 
 0.842
CKAN_02396300
Signal recognition particle receptor subunit alpha.
   
 
 0.839
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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