STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00110600Pentatricopeptide repeat-containing protein PNM1, mitochondrial. (518 aa)    
Predicted Functional Partners:
CKAN_00561500
Pentatricopeptide repeat-containing protein.
  
   0.918
CKAN_01805700
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
   0.851
CKAN_00200400
Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.829
CKAN_01819600
50S ribosomal protein L21, mitochondrial-like protein isoform X1.
   
   0.796
CKAN_01975000
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
   
   0.795
CKAN_01670600
Tumor necrosis factor receptor superfamily member 21.
   
   0.795
CKAN_02717900
Ribosomal protein S11 mitochondrion.
   
   0.795
CKAN_02756400
Ribosomal protein L16 mitochondrion; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.792
CKAN_00450700
39S ribosomal protein L46, mitochondrial.
   
   0.790
CKAN_01138400
30S ribosomal protein S16-2, chloroplastic/mitochondrial-like protein.
   
   0.789
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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