STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00226400DEAD-box ATP-dependent RNA helicase 16. (598 aa)    
Predicted Functional Partners:
CKAN_00031700
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.999
CKAN_02530500
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.999
CKAN_02345700
Peter Pan-like protein isoform X1.
   
   0.999
CKAN_00025100
WD repeat-containing protein 74 isoform X1.
   
 
 0.999
CKAN_02186900
Nucleolar complex protein 2.
   
 
 0.997
CKAN_00988300
DEAD-box ATP-dependent RNA helicase 13 isoform X1.
  
 
0.993
CKAN_00494700
U3 small nucleolar RNA-associated protein 14 A.
   
 0.988
CKAN_02542500
RNA-binding protein 28 isoform X1.
   
 
 0.986
CKAN_02574200
GDSL esterase/lipase-like protein isoform X1.
   
 
 0.984
CKAN_02540300
Brix domain-containing protein.
   
 
 0.984
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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