STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00092300Zinc finger protein. (380 aa)    
Predicted Functional Partners:
CKAN_02489400
E3 ubiquitin-protein ligase UPL4 isoform X1.
     
 0.709
CKAN_02489600
E3 ubiquitin-protein ligase UPL4 isoform X1.
     
 0.709
CKAN_01485800
E3 ubiquitin-protein ligase UPL3-like protein.
     
 0.696
CKAN_01040000
E3 ubiquitin-protein ligase UPL3-like protein.
     
 0.696
CKAN_00040700
Cleavage and polyadenylation specificity factor subunit 2.
   
 
  0.690
CKAN_01937900
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.660
CKAN_00511200
NEDD8-activating enzyme E1 catalytic subunit.
    
  0.582
CKAN_00285400
NADP-binding Rossmann-fold superfamily protein.
    
  0.582
CKAN_02573400
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
  0.582
CKAN_01031000
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
     
 0.558
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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