CKAN_00098600 protein (Cinnamomum micranthum)

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Score

CKAN_00098600

Cinnamoyl-CoA reductase 2. (347 aa)

Predicted Functional Partners:

CKAN_00478100

0.939

CKAN_01282300

0.920

CKAN_01846200

0.894

CKAN_01550300

0.894

CKAN_00641700

0.892

CKAN_01797500

0.892

CKAN_01164000

0.892

CKAN_01975900

0.892

CKAN_01233600

0.890

CKAN_01103800

0.890

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00098600	CKAN_00478100	A0A3S3M3T6	A0A443NCX6	Cinnamoyl-CoA reductase 2.	Ribosomal protein S10.	0.939
CKAN_00098600	CKAN_00641700	A0A3S3M3T6	A0A3S3MZI4	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.892
CKAN_00098600	CKAN_01103800	A0A3S3M3T6	A0A443NUZ8	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.890
CKAN_00098600	CKAN_01164000	A0A3S3M3T6	A0A3S3NMV9	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S11.	0.892
CKAN_00098600	CKAN_01233600	A0A3S3M3T6	A0A3S3MW37	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.890
CKAN_00098600	CKAN_01282300	A0A3S3M3T6	A0A443NZU7	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.	0.920
CKAN_00098600	CKAN_01550300	A0A3S3M3T6	A0A3S4P7B2	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.894
CKAN_00098600	CKAN_01797500	A0A3S3M3T6	A0A3S3N5Y6	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.892
CKAN_00098600	CKAN_01846200	A0A3S3M3T6	A0A3S3N6V1	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.894
CKAN_00098600	CKAN_01975900	A0A3S3M3T6	A0A443PIR4	Cinnamoyl-CoA reductase 2.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.892
CKAN_00478100	CKAN_00098600	A0A443NCX6	A0A3S3M3T6	Ribosomal protein S10.	Cinnamoyl-CoA reductase 2.	0.939
CKAN_00478100	CKAN_00641700	A0A443NCX6	A0A3S3MZI4	Ribosomal protein S10.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
CKAN_00478100	CKAN_01103800	A0A443NCX6	A0A443NUZ8	Ribosomal protein S10.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.998
CKAN_00478100	CKAN_01164000	A0A443NCX6	A0A3S3NMV9	Ribosomal protein S10.	40S ribosomal protein S11.	0.999
CKAN_00478100	CKAN_01233600	A0A443NCX6	A0A3S3MW37	Ribosomal protein S10.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.998
CKAN_00478100	CKAN_01282300	A0A443NCX6	A0A443NZU7	Ribosomal protein S10.	40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.	0.999
CKAN_00478100	CKAN_01550300	A0A443NCX6	A0A3S4P7B2	Ribosomal protein S10.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
CKAN_00478100	CKAN_01797500	A0A443NCX6	A0A3S3N5Y6	Ribosomal protein S10.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.998
CKAN_00478100	CKAN_01846200	A0A443NCX6	A0A3S3N6V1	Ribosomal protein S10.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
CKAN_00478100	CKAN_01975900	A0A443NCX6	A0A443PIR4	Ribosomal protein S10.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.998

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

13

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0034427

Nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5

9 of 14

3.23

12.46

4.64e-24

GO:0034475

U4 snRNA 3-end processing

7 of 9

3.31

9.67

1.52e-18

GO:0071027

Nuclear RNA surveillance

7 of 14

3.12

9.16

7.72e-18

GO:0043628

Small regulatory ncRNA 3-end processing

7 of 20

2.97

8.68

3.53e-17

GO:0016075

rRNA catabolic process

7 of 20

2.97

8.68

3.53e-17

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003723

RNA binding

9 of 1635

1.16

1.45

5.78e-07

GO:0003676

Nucleic acid binding

10 of 4082

0.81

0.77

2.92e-05

GO:0005488

Binding

11 of 12011

0.38

0.28

0.0243

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000178

Exosome (RNase complex)

8 of 22

2.98

10.06

6.13e-20

GO:0000177

Cytoplasmic exosome (RNase complex)

7 of 14

3.12

9.38

2.95e-18

GO:0000176

Nuclear exosome (RNase complex)

7 of 17

3.04

9.12

6.58e-18

GO:0031981

Nuclear lumen

8 of 785

1.43

2.28

7.30e-09

GO:0055087

Ski complex

2 of 4

3.12

2.15

0.00013

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2719

Nuclear RNA surveillance

9 of 15

3.2

12.32

7.57e-24

CL:2723

U4 snRNA 3-end processing

8 of 10

3.32

11.4

8.18e-22

CL:2728

Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA

5 of 5

3.42

6.81

4.12e-13

CL:14777

Regulation of wax biosynthetic process

2 of 5

3.02

1.56

0.0015

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dct03018

RNA degradation

10 of 86

2.49

9.89

1.37e-22

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-429958

mRNA decay by 3 to 5 exoribonuclease

10 of 24

3.04

13.47

9.97e-27

MAP-450385

Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA

8 of 12

3.25

11.37

6.73e-22

MAP-450513

Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA

8 of 13

3.21

11.32

7.24e-22

MAP-429914

Deadenylation-dependent mRNA decay

10 of 99

2.43

9.35

8.09e-22

MAP-450531

Regulation of mRNA stability by proteins that bind AU-rich elements

8 of 85

2.4

7.25

2.16e-16

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:1905354

Exoribonuclease complex

9 of 31

2.88

10.91

4.60e-22

GOCC:0000178

Exosome (RNase complex)

8 of 22

2.98

10.12

4.76e-20

GOCC:0055087

Ski complex

2 of 6

2.94

1.68

0.00090

GOCC:0032991

Protein-containing complex

11 of 3589

0.91

1.04

3.25e-08

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01138

3 exoribonuclease family, domain 1

4 of 8

3.12

4.38

9.72e-09

PF15985

KH domain

3 of 3

3.42

3.4

7.14e-07

PF03725

3 exoribonuclease family, domain 2

3 of 6

3.12

3.14

2.00e-06

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036345

Exoribonuclease, PH domain 2 superfamily

4 of 8

3.12

4.13

2.87e-08

IPR027408

PNPase/RNase PH domain superfamily

4 of 8

3.12

4.13

2.87e-08

IPR001247

Exoribonuclease, phosphorolytic domain 1

4 of 8

3.12

4.13

2.87e-08

IPR026699

Exosome complex RNA-binding protein 1/RRP40/RRP4

3 of 3

3.42

3.31

1.05e-06

IPR015847

Exoribonuclease, phosphorolytic domain 2

3 of 6

3.12

3.0

3.54e-06

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00316

Ribosomal protein S1-like RNA-binding domain

4 of 20

2.72

3.88

5.51e-08

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