STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00123100DNA binding protein, putative isoform 1. (394 aa)    
Predicted Functional Partners:
CKAN_02374800
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
    
 
 0.557
CKAN_02360300
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
    
 
 0.502
CKAN_02359800
Phytochrome B.
    
 
 0.502
CKAN_02679700
Phytochrome E isoform X2.
    
 
 0.487
CKAN_00874700
Signal transduction response regulator.
      
 0.469
CKAN_00917000
E3 ubiquitin-protein ligase COP1.
      
 0.437
CKAN_01052200
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12.
    
 
 0.419
CKAN_02428500
Transcription factor BIM2 isoform X1.
  
   
 0.418
CKAN_01898600
Cryptochrome 1.2.
      
 0.414
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.