Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKAN_00017900 | CKAN_00144000 | A0A3S3M8Q5 | A0A443N3T0 | RNA-processing protein. | U2 small nuclear ribonucleoprotein A. | 0.955 |
CKAN_00017900 | CKAN_00282700 | A0A3S3M8Q5 | A0A443N7N3 | RNA-processing protein. | Small nuclear ribonucleoprotein-associated protein B. | 0.953 |
CKAN_00017900 | CKAN_00430300 | A0A3S3M8Q5 | A0A443NBK9 | RNA-processing protein. | Splicing factor 3B subunit 1. | 0.978 |
CKAN_00017900 | CKAN_00497800 | A0A3S3M8Q5 | A0A443NDD5 | RNA-processing protein. | Nuclear cap-binding protein subunit 1. | 0.932 |
CKAN_00017900 | CKAN_00553800 | A0A3S3M8Q5 | A0A3S3NXD1 | RNA-processing protein. | RNA-binding protein 25 isoform X1. | 0.947 |
CKAN_00017900 | CKAN_01049400 | A0A3S3M8Q5 | A0A3S3MKQ2 | RNA-processing protein. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.894 |
CKAN_00017900 | CKAN_01540200 | A0A3S3M8Q5 | A0A3S3N1H3 | RNA-processing protein. | Nuclear cap-binding protein subunit 2. | 0.911 |
CKAN_00017900 | CKAN_02085900 | A0A3S3M8Q5 | A0A443PLN8 | RNA-processing protein. | Cell division cycle 5-like protein. | 0.939 |
CKAN_00017900 | CKAN_02130200 | A0A3S3M8Q5 | A0A3S3MXZ7 | RNA-processing protein. | Zinc finger protein. | 0.894 |
CKAN_00017900 | CKAN_02342800 | A0A3S3M8Q5 | A0A443PTQ3 | RNA-processing protein. | Putative small nuclear ribonucleoprotein F. | 0.932 |
CKAN_00144000 | CKAN_00017900 | A0A443N3T0 | A0A3S3M8Q5 | U2 small nuclear ribonucleoprotein A. | RNA-processing protein. | 0.955 |
CKAN_00144000 | CKAN_00282700 | A0A443N3T0 | A0A443N7N3 | U2 small nuclear ribonucleoprotein A. | Small nuclear ribonucleoprotein-associated protein B. | 0.993 |
CKAN_00144000 | CKAN_00430300 | A0A443N3T0 | A0A443NBK9 | U2 small nuclear ribonucleoprotein A. | Splicing factor 3B subunit 1. | 0.992 |
CKAN_00144000 | CKAN_00497800 | A0A443N3T0 | A0A443NDD5 | U2 small nuclear ribonucleoprotein A. | Nuclear cap-binding protein subunit 1. | 0.940 |
CKAN_00144000 | CKAN_00553800 | A0A443N3T0 | A0A3S3NXD1 | U2 small nuclear ribonucleoprotein A. | RNA-binding protein 25 isoform X1. | 0.961 |
CKAN_00144000 | CKAN_01049400 | A0A443N3T0 | A0A3S3MKQ2 | U2 small nuclear ribonucleoprotein A. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.943 |
CKAN_00144000 | CKAN_01540200 | A0A443N3T0 | A0A3S3N1H3 | U2 small nuclear ribonucleoprotein A. | Nuclear cap-binding protein subunit 2. | 0.952 |
CKAN_00144000 | CKAN_02085900 | A0A443N3T0 | A0A443PLN8 | U2 small nuclear ribonucleoprotein A. | Cell division cycle 5-like protein. | 0.967 |
CKAN_00144000 | CKAN_02130200 | A0A443N3T0 | A0A3S3MXZ7 | U2 small nuclear ribonucleoprotein A. | Zinc finger protein. | 0.943 |
CKAN_00144000 | CKAN_02342800 | A0A443N3T0 | A0A443PTQ3 | U2 small nuclear ribonucleoprotein A. | Putative small nuclear ribonucleoprotein F. | 0.993 |
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