STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00495000dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase. (430 aa)    
Predicted Functional Partners:
CKAN_00570400
UDP-glucose 6-dehydrogenase.
 
 0.949
CKAN_01194700
UDP-glucose 6-dehydrogenase.
 
 0.930
CKAN_01110800
NAD-dependent epimerase/dehydratase.
  
  
0.899
CKAN_01606100
UDP-glucuronate 4-epimerase 6.
   
0.893
CKAN_00803200
UDP-sugar pyrophosphorylase-like protein.
   
 
 0.888
CKAN_00376900
UDP-glucuronate 4-epimerase 1.
   
0.885
CKAN_02352300
Cellulose synthase-like protein D5; Belongs to the glycosyltransferase 2 family.
     
 0.878
CKAN_00883700
GDP-mannose 4,6 dehydratase.
  
0.877
CKAN_00524800
UDP-glucuronic acid decarboxylase 6.
  
  
 
0.864
CKAN_00478100
Ribosomal protein S10.
   
 0.861
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.