STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00000900Ubiquinol oxidase; Belongs to the alternative oxidase family. (367 aa)    
Predicted Functional Partners:
CKAN_00999000
Phytoene dehydrogenase.
      
 0.511
CKAN_00620900
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
      
 0.478
CKAN_01604900
15-cis-zeta-carotene isomerase.
      
 0.435
CKAN_02593000
Protein PROTON GRADIENT REGULATION 5, chloroplastic-like protein.
      
 0.433
CKAN_00986100
Protein PROTON GRADIENT REGULATION 5, chloroplastic-like protein.
      
 0.433
CKAN_02663300
Photosystem II protein, chloroplastic.
      
 0.430
CKAN_02168400
Protein MIZU-KUSSEI 1-like protein.
      
 0.426
CKAN_02514100
Protein kinase domain-containing protein.
      
 0.412
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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